Publications

Yuhui Zhang, Jeff Z HaoChen, Mars (Shih-Cheng) Huang, Kuan-Chieh Wang, James Zou, Serena Yeung (2023). DrML: Diagnosing and Rectifying Vision Models using Language. ICLR.

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Rui Yan, Liangqiong Qu, Qingyue Wei, Mars (Shih-Cheng) Huang, Liyue Shen, Daniel Rubin, Lei Xing, Yuyin Zhou (2023). Self-supervised learning for medical image classification: a systematic review and implementation guidelines. IEEE Transactions on Medical Imaging.

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Mars (Shih-Cheng) Huang, Anuj Pareek, Malte Jensen, Matthew P. Lungren, Serena Yeung, Akshay S. Chaudhari (2023). Self-supervised learning for medical image classification: a systematic review and implementation guidelines. Nature Digital Medicine (Under Review).

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Yuhui Zhang, Mars (Shih-Cheng) Huang, Zhengping Zhou,, Matthew P. Lungren, Serena Yeung (2022). Adapting pre-trained vision transformers from 2D to 3D through weight inflation improves medical image segmentation. ML4H.

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Mars (Shih-Cheng) Huang, Akshay S. Chaudhari, Curtis P. Langlotz, Nigam Shah, Serena Yeung, Matthew P. Lungren (2022). Developing medical imaging AI for emerging infectious diseases. Nature Communications.

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Judy Wawira Gichoya, Imon Banerjee, Ananth Reddy Bhimireddy, John L Burns, Leo Anthony Celi, Li-Ching Chen, Ramon Correa, Natalie Dullerud, Marzyeh Ghassemi, Mars (Shih-Cheng) Huang, Po-Chih Kuo, Matthew P Lungren, Lyle J Palmer, Brandon J Price, Saptarshi Purkayastha, Ayis T Pyrros, Lauren Oakden-Rayner, Chima Okechukwu, Laleh Seyyed-Kalantari, Hari Trivedi, Ryan Wang, Zachary Zaiman, Haoran Zhang (2022). AI recognition of patient race in medical imaging: a modelling study. The Lancet Digital Health.

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Andre Esteva, Jean Feng, Douwe van der Wal, Mars (Shih-Cheng) Huang, Jeffry P Simko, Sandy DeVries, Emmalyn Chen, Edward M Schaeffer, Todd M Morgan, Yilun Sun, Amirata Ghorbani, Nikhil Naik, Dhruv Nathawani, Richard Socher, Jeff M Michalski, Mack Roach III, Thomas M Pisansky, Jedidiah M Monson, Farah Naz, James Wallace, Michelle J Ferguson, Jean-Paul Bahary, James Zou, Matthew Lungren, Serena Yeung, Ashley E Ross, Howard M Sandler, Phuoc T Tran, Daniel E Spratt, Stephanie Pugh, Felix Y Feng, Osama Mohamad, NRG Prostate Cancer AI Consortium (2022). Prostate cancer therapy personalization via multi-modal deep learning on randomized phase III clinical trials. Nature Digital Medicine.

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Andre Esteva, Jean Feng, Mars (Shih-Cheng) Huang, Douwe van der Wal, Jeffry Simko, Sandy DeVries, Emmalyn Chen, Edward M Schaeffer, Todd Matthew Morgan, Jedidiah Mercer Monson, Farah Naz, James Wallace, Michelle J Ferguson, Jean-Paul Bahary, Howard M Sandler, Phuoc T Tran, Daniel Eidelberg Spratt, Stephanie L Pugh, Felix Y Feng, Osama Mohamad (2022). Development and validation of a prognostic AI biomarker using multi-modal deep learning with digital histopathology in localized prostate cancer on NRG Oncology phase III clinical trials.. Journal of Clinical Oncology.

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Jiangdian Song, Mars (Shih-Cheng) Huang, Brendan Kelly, Guanqun Liao, Jing-yun Shi, Ning Wu, Weimin Li, Zaiyi Liu, Lei Cui, Matthew P Lungren, Michael Moseley, Peng Gao, Jie Tian, Kristen Yeom (2021). Automatic lung nodule segmentation and intra-nodular heterogeneity image generation. IEEE Journal of Biomedical and Health Informatics.

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Yuyin Zhou, Mars (Shih-Cheng) Huang, Jason Alan Fries, Alaa Youssef, Timothy J. Amrhein, Marcello Chang, Imon Banerjee, Daniel Rubin, Lei Xing, Nigam Shah, Matthew P. Lungren (2021). RadFusion: Benchmarking Performance and Fairness for Multimodal Pulmonary Embolism Detection from CT and EHR. arXiv.

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Mars (Shih-Cheng) Huang, Liyue Shen, Matthew P Lungren, Serena Yeung (2021). GLoRIA: A Multimodal Global-Local Representation Learning Framework for Label-Efficient Medical Image Recognition. ICCV.

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Mars (Shih-Cheng) Huang, Anuj Pareek, Roham Zamanian, Imon Banerjee, Matthew P. Lungren (2020). Multimodal fusion with deep neural networks for leveraging CT imaging and electronic health record: a case-study in pulmonary embolism detection. Nature Scientific Reports.

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Ashton Teng, Blanca Villanueva, Derek Jow, Mars (Shih-Cheng) Huang, Samantha N Piekos, Russ B Altman (2020). Biomedical Graph Visualizer for Identifying Drug Candidates. biorXiv.

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Mars (Shih-Cheng) Huang, Anuj Pareek, Saeed Seyyedi, Imon Banerjee, Matthew P. Lungren (2020). Fusion of medical imaging and electronic health records using deep learning: a systematic review and implementation guidelines. Nature Digital Medicine.

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Mars (Shih-Cheng) Huang, Tanay Kothari, Imon Banerjee, Chris Chute, Robyn L Ball, Norah Borus, Andrew Huang, Bhavik N Patel, Pranav Rajpurkar, Jeremy Irvin, Jared Dunnmon, Joseph Bledsoe, Katie Shpanskaya, Abhay Dhaliwal, Roham Zamanian, Andrew Y Ng, Matthew P Lungren (2020). PENet—a scalable deep-learning model for automated diagnosis of pulmonary embolism using volumetric CT imaging. Nature Digital Medicine.

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Anirudh Joshi, Sabri Eyuboglu, Mars (Shih-Cheng) Huang, Jared Dunnmon, Arjun Soin, Guido Davidzon, Akshay Chaudhari, Matthew P Lungren (2020). OncoNet: Weakly Supervised Siamese Network to automate cancer treatment response assessment between longitudinal FDG PET/CT examinations. arXiv.

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Adam Rule, Amanda Birmingham, Cristal Zuniga, Ilkay Altintas, Mars (Shih-Cheng) Huang, Rob Knight, Niema Moshiri, Mai H. Nguyen, Sara Brin Rosenthal, Fernando Pérez, Peter W. Rose (2019). Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks. PLOS Computational Biology.

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